PUBLICATIONS
2007
2006
2005
2004
2003
2002
2001
2000
1999
1998
PUBLICATIONS
DATE AUTHOR(S) TITLE PUBLICATIONS
2007   Gullerova M, Barta A, Lorkovic ZJ.   Rct1, a nuclear RNA recognition motif-containing cyclophilin, regulates phosphorylation of the RNA polymerase II C-terminal domain   Mol Cell Biol. 2007 May;27(10):3601-11.
2007   Asparuhova, M.B., Marti, G., Liu, S., Serhan F., Trono, D. and Schümperli, D.   Inhibition of HIV-1 multiplication by a modified U7 snRNA inducing Tat and Rev exon skipping.   J. Gene Med. 9, 323-334.
2007 Michael P. Spiller1, Kum-Loong Boon, Martin A. M. Reijns and Jean D. Beggs The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA Nucleic Acids Research Advance Access.
2006   Kalyna M, Lopato S, Voronin V, Barta A.   Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins.   Nucleic Acids Res. 2006;34(16):4395-405.
2006 Kornblihtt, A. R. Chromatin Transcript elongation and alternative splicing. Nature Struct. Mol. Biol. 13, 5-7 (2006) (News and Views article).
2006 Srebrow, A. & Kornblihtt, A. R. The splicing-cancer connection. J. Cell. Sci. 119, 2635-2641 (2006)
2006 Mühlemann, O. and Akusjärvi, G. Preparation of soluble extracts from adenovirus-infected cells for studies of RNA splicing. Methods in Molecular Biology: Adenovirus methods and Protocols. Ed. W.S.M. Wold. And A.E. tollefson, Humana Press Inc., Totowa, New Jersey. 131, 33-46.
2006 Törmänen, H., Backström, E. Carlsson, A. and Akusjärvi, G. L4-33K, an adenovirus encoded alternative RNA splicing factor. J. Biol. Chem. 281, 36510-36517.
2006 de la Mata, M. & Kornblihtt, A. R. RNA polymerase II C-terminal domain mediates regulation of alternative splicing by SRp20. Nature Struct. Mol. Biol. 13, 973-980 (2006). (Commented as News and Views in Nature Struct. Mol. Biol. 13, 952-953, 2006; selected en Faculty of 1000).
2006 Y.M.Ayala, F.Pagani and F.E.Baralle TDP43 Depletion Rescues Aberrant CFTR Exon 9 Skipping FEBS Letters, 580: 1339-1344
2006 Barbosa-Morais, N., Carmo-Fonseca, M., Aparicio, S. Systematic genome/wide annotation of spliceosomal proteins reveals differential gene family expansion. Genome Res. 16: 66-77.
2006 Gama-Carvalho, M., and Carmo-Fonseca, M. Heterokaryon assays. In "Cell Biology – a Laboratory Manual", ed. Julio Celis, Elsevier Science USA.  
2006 Custodio, N., Carvalho, C., Carneiro, T. and Carmo-Fonseca, M. In situ hybridization for simultaneous detection of DNA, RNA and protein. In "Cell Biology – a Laboratory Manual", ed. Julio Celis, Elsevier Science USA.  
2006 Kozlova N, Braga J, Lundgren J, Rino, J, Young, P, Carmo-Fonseca, M. Studies on the role of NonA in mRNA biogenesis. Exp Cell Res. 312: 2619-30.
2006 Custódio N, Antoniou M, Carmo-Fonseca M. Abundance of the largest subunit of RNA polymerase II in the nucleus is regulated by nucleo-cytoplasmic shuttling. Exp Cell Res. 312: 2557-67
2006 Pacheco TR, Moita LF, Gomes AQ, Hacohen N, Carmo-Fonseca M RNAi Knockdown of hU2AF35 Impairs Cell Cycle Progression and Modulates Alternative Splicing of Cdc25 Transcripts. Mol Biol Cell 17(10):4187-4199
2006 Pacheco, T.R., Coelho, M.B., Desterro, J.M.P., Mollet, I., and Carmo-Fonseca, M. In vivo requirement of the small subunit of U2AF for recognition of a weak 3’ splice site. Molecular Cellular Biology 26(21):8183-90
2006 Mollet, I., Barbosa-Morais NL, Andrade J, Carmo-Fonseca, M Diversity of human U2AF splicing factors. FEBS J. 2006 Oct;273(21):4807-16
2006 Gama-Carvalho, M., Barbosa-Morais, N.L., Brodsky, A.S., Silver, P.A., Carmo-Fonseca, M Genome wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors. Genome Biol. 7(11):R113
2006 Ben-Ari, S., Toiber, D., Sas, A. S., Soreq, H., and Ben-Shaul, Y. Modulated splicing-associated gene expression in P19 cells expressing distinct acetylcholinesterase splice variants. J Neurochem 97 Suppl 1, 24-34. PMID: 16635247
2006 Boon, K.L., Norman, C., Grainger, R.J., Newman, A.J. and Beggs, J.D. Prp8p dissection reveals domain structure and protein interaction sites. RNA 12: 198-205.
2006 Buratti, E., Baralle, M., and Baralle, F.E. Defective splicing, disease, and therapy: searching for master checkpoints in exon definition NAR 34: 3494-3510
2006 L.Costessi, G.Devescovi, F.E.Baralle and A.F.Muro Brain-specific promoter and polyadenylation sites of the beta-adducin pre-mRNA generate an unusually long 30'-UTR NAR, 34: 243-253
2006 Gabellini D, D’Antona G, Moggio M, Prelle A, Zecca C, Adami R, Angeletti B, Ciscato P, Pellegrino MA, Bottinelli R, Green MR, Tupler R. Facioscapulohumeral Muscular Dystrophy in Transgenic Mice by Over-Expression of FRG1. Nature 439:973-977.
2006 C. Gooding, F. Clark, M.C. Wollerton, S. Nagaraj-Grellscheid, H. Groom and C.W.J. Smith. A class of human exons with predicted distant branch points revealed by analysis of AG dinucleotide exclusion zones. Genome Biology 7, R1
2006 Grisaru, D., Pick, M., Perry, C., Sklan, E.H., Almog, R., Goldberg, I., Naparstek, E., Lessing, J.B., Soreq H. and Deutsch, V. Hydrolytic and non-enzymatic functions of acetylcholinesterase co-modulate hematopoietic stress responses. J. Immunol, 176, 27-35
2006 Guil,S., Long,J.C., and Caceres,J.F. hnRNP A1 relocalization to the stress granules reflects a role in the stress response. Mol. Cell Biol. 26, 5744-5758. PMID: 16847328
2006 Karaduman, R., Fabrizio, P., Hartmuth, K., Urlaub, H., Luhrmann, R. RNA Structure and RNA-Protein Interactions in Purified Yeast U6 snRNPs. J. Mol. Biol. 356:1248-62.
2006 Klingauf, M., D. Stanek, and K.M. Neugebauer. Enhancement of U4/U6 snRNP association in Cajal bodies predicted by mathematical modeling. Mol. Biol. Cell: 17:4972. Pubmed ID 16987958
2006 Kishore, S., and Stamm, S. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 311, 230-232.
2006 Listerman, I., Sapra, A. K., and Neugebauer, K. M. Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells Nat Struct Mol Biol. e-pub ahead of print. Pubmed ID 16921380
2006 Listerman, I., Sapra, A. K., and Neugebauer, K. M. Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. Nat Struct Mol Biol. e-pub ahead of print. Pubmed ID 16921380
2006 Manival X., Charron C., Fourmann J. B.,. Godard F., Charpentier B. and Branlant C. Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity Nucleic Acids Res. 34, 826-839
2006 Meshorer, E., and Soreq, H. Virtues and woes of AChE alternative splicing in stress-related neuropathologies. Trends Neurosci 29, 216-224. PMID: 16516310
2006 Neugebauer, K. M. Keeping tabs on the women: life scientists in Europe. PLoS Biol 4, e97. Pubmed ID 16602822
2006 Neugebauer, K. M. Please hold--the next available exon will be right with you. Nat Struct Mol Biol 13, 385-386. Pubmed ID 16738604
2006 Öhrmalm, C. and Akusjärvi, G. The cellular splicing/transcription regulatory protein p32 represses adenovirus major late transcription unit and causes RNA polymerase II hyperphosphorylation. J. Virol. In press.
2006 Sklan, E. H., Berson, A., Birikh, K. R., Gutnick, A., Shahar, O., Shoham, S., and Soreq, H. Acetylcholinesterase Modulates Stress-Induced Motor Responses Through Catalytic and Noncatalytic Properties. Biol Psychiatry, in press. PMID: 16904653
2006 Stamm, S., Riethoven, J. J., Le Texier, V., Gopalakrishnan, C., Kumanduri, V., Tang, Y., Barbosa-Morais, N. L., and Thanaraj, T. A. ASD: a bioinformatics resource on alternative splicing. Nucleic Acids Res 34, D46-55.
2006 Stanek, D., and Neugebauer, K. M. The Cajal body: a meeting place for spliceosomal snRNPs in the nuclear maze. Chromosoma 115, 343-354. Pubmed ID 16575476
2006 Wu, C.H., Apweiler, R., Bairoch, A., Natale, D.A, Barker, W.C., Boeckmann, B., Ferro, S., Gasteiger, E., Huang, H., Lopez, R., Magrane, M., Martin, M.J., Mazumder, R., O'Donovan, C., Redaschi, N., and Suzek, B. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucl Acids Res 34, D187-D91.
2005 Andersen, J. S., Lam, Y. W., Leung, A. K., Ong, S. E., Lyon, C. E., Lamond, A. I., and Mann, M. Nucleolar proteome dynamics. Nature 433, 77-83.
2005 Buratti, E., Brindisi, A., Giombi, M., Tisminetzky, S., Ayala, Y.M., and Baralle, F.E. TDP-43 binds Heterogeneous Nuclear Ribonucleoprotein A/B through Its C-terminal Tail: An important region for the inhibition of cystic fibrosis transmembrane conductance regulator exon 9 splicing. J Biol Chem, 280, 37572-37584
2005 P. Carninci, T. Kasukawa, S. Katayama, et al. The transcriptional landscape of the mammalian genome. Science 309:1559-1563
2005 Cazalla,D., Newton,K., and Caceres,J.F. A Novel SR-Related Protein Is Required for the Second Step of Pre-mRNA Splicing. Mol. Cell Biol. 25, 2969-2980.
2005 Chusainow, J., Ajuh, P. M., Trinkle-Mulcahy, L., Sleeman, J. E., Ellenberg, J., and Lamond, A. I. FRET analyses of the U2AF complex localize the U2AF35/U2AF65 interaction in vivo and reveal a novel self-interaction of U2AF35. RNA 11, 1201-1214.
2005 Cochrane, G., Aldebert, P., Althorpe, N., Andersson, M., Baker, W., Baldwin, A., Bates, K., Bhattacharyya, S., Browne, P., Van Den Broek, A., Castro, M., Duggan, K., Eberhardt, R., Faruque, N., Gamble, J., Kanz, C., Kulikova, T., Lee, C., Leinonen, R., Lin, Q., Lombard, V., Lopez, R., McHale, M., McWilliam, H., Mukherjee, G., Nardone, F., Pastor, M.P., Sobhany, S., Stoehr, P., Tzouvara, K., Vaughan, R., Wu, D., Zhu, W., and Apweiler R. EMBL Nucleotide Sequence Database: developments in 2005. Nucl Acids Res 34, D10-D15.
2005 Cook, H.L., Lytle, J.R., Mischo, H.E., Li, M.-J., Rossi, J.J., Silva, D.P., Desrosiers, R.C., and Steitz, J.A. Small nuclear RNAs encoded by Herpesvirus saimiri upregulate the expression of genes linked to T cell activation in virally transformed T cells. Curr. Biol. 15, 974-979.
2005 Di Segni G., Borghese L., Sebastiani S. and Tocchini-Valentini G.P. A pretRNA carrying intron features typical of Archaea is pliced in yeast. RNA 11, 70-76.
2005 Fededa, J.P., Petrillo, E., Gelfand, M.S., Neverov, A.D., Kadener, S., Nogués, G., Pelisch, F., Baralle, F.E., Muro, A.F., and Kornblihtt, A.R. A polar mechanism coordinates different regions of alternative splicing within a single gene. Mol. Cell 19, 393-404
2005 M. Gabut, M. Miné, C. Marsac, M. Brivet, J. Tazi and J. Soret. The SR protein SC35 is responsible for aberrant splicing of the E1? Pyruvate Dehydrogenase mRNA in a case of mental retardation with lactic acidosis. Mol. Cell. Biol. 25, 3286-3294
2005 Ghigna, C., Giordano, S., Shen, H., Benvenuto, F., Castiglioni, F., Comoglio, P. M., Green, M. R., Riva, S., and Biamonti, G. Cell Motility Is Controlled by SF2/ASF through Alternative Splicing of the Ron Protooncogene. Mol Cell 20, 881-890.
2005 Golas, M.M., Sander, N,. Will, C.L., Lührmann, R., Stark, H. Major conformational change in the complex SF3b upon integration into the spliceosomal U11/U12 di-snRNP as revealed by electron cryomicroscopy. Mol. Cell 17:869-83.
2005 Görnemann, J., K. Kotovic, K. Hujer, and K. Neugebauer. Co-transcriptional spliceosome assembly occurs in a stepwise fashion and requires the cap-binding complex. Molecular Cell. 19:53-63.
2005 Grainger, R.J. and Beggs, J.D. Prp8 protein; at the heart of the spliceosome. RNA 11: 533-557.
2005 Hein, I., Barciszewska-Pacak, M., Hrubikowa, K., Williamson, S., Dinesen, M., Soenderby, I.E., Sundar, S., Jarmolowski, Shirasu, K., and Lacomme, C. Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley. Plant Physiol. 138, 2155-64.
2005 Hui, J., Hung, L.-H., Heiner, M., Schreiner, S., Neumüller, N., Reither, G., Haas, S.A., and Bindereif, A. Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24, 1988-1998.
2005 Izquierdo, J.M., Majos, N., Bonnal, S., Martínez, C., Castelo, R., Guigó, R., Bilbao, D., and Valcárcel, J Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition. Molecular Cell, 19: 475-484.
2005 Kol, G., Lev-Maor, G., Ast, G. Human-Mouse Comparative Analysis reveals that Branch-site plasticity contributes to splicing regulation. Human Molecular Genetics. 14:1559-1568.
2005 Kolev, N. and Steitz, J.A. Symplekin and multiple other polyadenylation factors participate in 3?-end maturation of histone mRNAs. Genes Dev. 19, 2583-2592.
2005 Kornblihtt, A. R. Promoter usage and alternative splicing. Curr. Op. Cell Biol. 17, 262-268.
2005 Kralovicova, J., Houngninou-Molango, S., Krämer, A., and Vorechovsky, I. Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo. Mol Biol Cell 16, 1366-1377.
2005 Kühn-Hölsken E., Lenz C., Sander B., Lührmann R. & Urlaub H. Complete MALDI-ToF analysis of cross-linked peptide–RNA oligonucleotied derived from nonlabled UV-irradiated ribonucleoprotein particles RNA, 11, 1915-30.
2005 Lützelberger, M. Backström, E. and Akusjärvi, G. Substrate dependent differences in U2AF requirement for splicing in adenovirus-infected cell extracts. J. Biol.Chem. 280, 25478-25484.
2005 A.J. Matlin, F. Clark and C.W.J. Smith. Understanding alternative splicing; towards a cellular code. Nature Reviews Mol. Cell. Biol. 6, 386-398
2005 Orchard, S., Hermjakob, H., and Apweiler, R. Annotating the human proteome. Mol Cell Proteomics 4, 435-440.
2005 Pagani, F., Raponi, M., and Baralle, F.E. Synonymous mutations in CFTR exon 12 affect splicing and are not neutral in evolution. PNAS 102, 6368-6372
2005 Relogio, A., Ben-Dov, C., Baum, M., Ruggiu, M., Benes, V., Darnell R.L. and Valcárcel, J Splicing microarrays reveal functional expression of neuron-specific splicing regulators in Hodgkin lymphoma cells. Journal of Biological Chemistry, 280: 4779-84.
2005 Sanford,J.R., Ellis,J.D., Cazalla,D., and Caceres,J.F. Reversible phosphorylation differentially affects nuclear and cytoplasmic functions of splicing factor 2/alternative splicing factor. Proc. Natl. Acad. Sci. U. S. A 102, 15042-15047.
2005 Seli, E., Lalioti, M.D., Flaherty, S., Sakkas, D., Terzi, N., and Steitz, J. A. An embryonic poly(A)-binding protein (ePAB) is expressed in mouse oocytes and early preimplantation embryos. Proc. Natl. Acad. Sci., USA 102, 367-372.
2005 Shomron, N., Alberstein, M., Reznik M. and Ast, G. Stress alters the subcellular distribution of hSlu7 and modulates alternative splicing. J. Cell Science 118: 1151-1159.
2005 Singh, R. and Valcárcel, J Building specificity with non-specific RNA binding proteins. Nature Structural and Molecular Biology, 12: 645-653.
2005 J. Soret, N. Bakkour, S. Maire, S. Durand, L. Zekri, M. Gabut, W. Fic, G. Divita, C. Rivalle, D. Dauzonne, C. H. Nguyen, Ph. Jeanteur and J. Tazi. Selective modification of alternative splicing by indole derivatives that target SR protein splicing factors. Proc Natl Acad Sci U S A, 102, 8764-8769
2005 Tanackovic, G., and Krämer, A. Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo. Mol Biol Cell 16, 1366-1377.
2005 J. Tazi, S. Durand, Ph. Jeanteur. Spliceosome: a novel multi-facet target for therapy. TIBS, 30, 469-478
2005 Tocchini-Valentini G. D., Fruscoloni P. and Tocchini-Valentini G.P. Structure, function, and evolution of the tRNA endonucleases of Archaea: an example of subfunctionalization. PNAS 102, 8933-8938.
2005 Tocchini-Valentini G. D., Fruscoloni P. and Tocchini-Valentini G.P. Coevolution of tRNA intron motifs and tRNA endonuclease architecture in Archaea. PNAS 102, 15418-15422.
2005 Valgardsdottir, R., Chiodi, I., Giordano, M., Cobianchi, F., Riva, S., and Biamonti, G. Structural and functional characterization of noncoding repetitive RNAs transcribed in stressed human cells. Mol Biol Cell 16, 2597-2604.
2005 Venables, J.P., Bourgeois, C.F., Dalgliesh, C., Kister, L., Stévenin, J. and Elliott, D.J. Upregulation of the ubiquitous alternative splicing factor Tra2ß causes inclusion of a germ cell specific exon Hum. Mol. Genet. 14, 2289-2303.
2005 Zalfa F., Adinolfi S., Napoli J., Kühn-Hölsken E., Urlaub H., Achsel T., Pastore A. & Bagni C. Fragile X mental retardation (FMRP) binds specifically to the brain cytoplasmic RNAs BC1/BC200 via a novel RNA-binding motif J. Biol. Chem., 280, 33403–33410
2004 Custódio, N., Carvalho, C., Condado, I., Antoniou, M., Blencowe, B.J. and Carmo-Fonseca, M. In vivo recruitment of exon junction complex proteins to transcription sites in mammalian cell nuclei. RNA 10: 622-633.
2004 Pacheco, T.R., Gomes, A.Q., Barbosa-Morais, N.L., Benes, V., Ansorge, W., Wollerton, M., Smith C.W., Valcarcel, J., and Carmo-Fonseca, M. Diversity of vertebrate splicing factor U2AF35: identification of alternatively spliced U2AF1 mRNAs J. Biol. Chem 279: 27039-27049.
2004 Asparuhova. M., Kole, R. and Schümperli, D. Antisense derivatives of U7 and other small nuclear RNAs as tools to modify pre-mRNA splicing patterns. Gene Therapy Regul. 2, 321-349 Review.
2004 Ast G. How did alternative splicing evolve? Nature Reviews Genetics. 5(10):773-782.
2004 Biamonti, G. Nuclear stress bodies: a heterochromatin affair? Nat Rev Mol Cell Biol 5, 493-498.
2004 Böhringer, D., Makarov, E. M., Sander, B., Makarova, O. V., Kastner, B., Lührmann, R., Stark, H. Three-dimensional structure of a pre-catalytic human spliceosomal complex B. Nature Struct. Mol. Biol. 11: 463-468.
2004 Bourgeois, C.F., Lejeune, F. and Stévenin, J. Broad specificty of SR (Serine/Arginine) proteins in the regulation of alternative splicing of pre-messenger RNA Prog. Nucl. Acid Res. Mol. Biol. 78, 37-88.
2004 Buratti, E., Muro, A.F., Giombi, M., Gherbassi, D., Iaconcig, A., and Baralle, F.E. RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon. Mol. Cell. Biol., 24, 1387-1400
2004 Damianov, A., Schreiner, S., and Bindereif, A. Recycling of the U12-type spliceosome requires p110, a component of the U6atac snRNP. Mol. Cell. Biol. 24, 1700-1708.
2004 P.D. Ellis, C.W.J. Smith and P.R. Kemp. Regulated tissue specific alternative splicing of EGFP transgenes conferred by ?-tropomyosin regulatory elements in transgenic mice. J. Biol. Chem. 279, 36660-36669
2004 Gabellini D, Green MR, Tupler R. When enough is enough: genetic diseases associated with transcriptional derepression. Curr Opin Genet Dev 14:301-307.
2004 Huang, Y., Yario, T.A. and Steitz, J.A. A molecular link between SR protein dephosphorylation and mRNA export. Proc. Natl. Acad. Sci., USA 101, 9666-9670.
2004 Ittig, D., Liu, S.-K., Renneberg, D., Schümperli, D. and Leumann, C.J. Nuclear antisense effects in cyclophilin A pre-mRNA splicing by oligonucleotides: a comparison of tricyclo-DNA with LNA. Nucleic Acids Res. 32, 346-353.
2004 Jakobsen, M., Damgaard, C.K. , Andersen, E. S. , Podhajska, A., and Kjems, J. A genomic SELEX strategy to identify accessible and dimerization sensitive target sites in HIV-1 RNA. Nucleic Acids Res. 32:e67
2004 R. Kittler, G. Putz, L. Pelletier, I. Poser, A. Heninger, D. Drechsel, S. Fischer, I. Konstantinova, B. Habermann, H. Grabner, M. Yaspo, H. Himmelbauer, B. Korn, K. Neugebauer, M. Pisabarro, and F. Buchholz. A large-scale RNAi screen in human cells identifies genes essential for cell division. Nature 432:1036-1040.
2004 Lewandowska, D., Simpson, C. G., Clark, G. P., Jennings, S. N., Barciszewska-Pacak, M., Lin, C.-F., Makalowski, W, Brown, J. W. S. and Jarmolowski, A. Determinants of plant U12-dependent intron splicing efficiency. Plant Cell 16, 1340-1352.
2004 Medenbach, J., Schreiner, S., Liu, S., Lührmann, R., and Bindereif, A. Human U4/U6 snRNP recycling factor p110: mutational analysis reveals function of TPR domain in recycling. Mol. Cell. Biol. 24, 7392-7401.
2004 Misztal, L.H., Mostowska, A., Skibinska, M., Bajsa, J., Musial, W.G., and Jarmolowski, A. Expression of modified Cry1Ac gene of Bacillus thuringiensis in transgenic tobacco plants. Mol. Biotechnol. 26, 17-26.
2004 Pedrioli, P. G., Eng, J. K., Hubley, R., Vogelzang, M., Deutsch, E. W., Raught, B., Pratt, B., Nilsson, E., Angeletti, R. H., Apweiler, R., Cheung, K., Costello, C. E., Hermjakob, H., Huang, S., Julian, R. K., Kapp, E., McComb, M. E., Oliver, S. G., Omenn, G., Paton, N. W., Simpson, R., Smith, R., Taylor, C.F., Zhu, W., Aebersold, R. A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol. 22, 1459-1466.
2004 Rafalska, I., Zhang, Z., Benderska, N., Wolff, H., Hartmann, A. M., Brack-Werner, R., and Stamm, S. The intranuclear localization and function of YT521-B is regulated by tyrosine phosphorylation. Hum Mol Genet 13, 1535-1549
2004 Rigatti, R., Jia, J.-H., Samani, N.J., and Eperon, I.C. Exon repetition: a major pathway for processing mRNA of some genes is allele-specific. Nucleic Acids Res. 32, 441-446.
2004 Rizzi, N., Denegri, M., Chiodi, I., Corioni, M., Valgardsdottir, R., Cobianchi, F., Riva, S., and Biamonti, G. Transcriptional activation of a constitutive heterochromatic domain of the human genome in response to heat shock. Mol Biol Cell 15, 543-551.
2004 Ropers D., Ayadi-Behn-Mena L., Gattoni R., Jacquenet S., Damier L., Branlant C. and Stévenin J. Differential effects of the SR proteins 9G8, SC35, ASF/SF2 and SRp40 on the utilization of the A1 to A5 splicing sites of HIV-1 RNA J. Biol. Chem. 279, 29963-29973.
2004 Sanford,J.R., Gray,N.K., Beckmann,K., and Caceres,J.F. A novel role for shuttling SR proteins in mRNA translation. Genes Dev. 18, 755-768.
2004 Simpson, C. G., Jennings, S. N., Clark, G. P., Thow, G. and Brown, J. W. S. Dual functionality of a plant U-rich intronic sequence element. Plant Journal 37, 82-91.
2004 Sorek R., Lev-Maor G., Reznik M., Dagan T., Belinky F., Graur D., Ast G. Minimal conditions for exonization of intronic sequences: 5’ splice site formation in Alu exons. Mol. Cell. 14(2):221-231.
2004 Stanek, D. and K.M. Neugebauer. Detection of snRNP assembly intermediates in Cajal bodies by fluorescence resonance energy transfer. J. Cell Biol. 166:1015-1025.
2004 Stoilov, P., Daoud, R., Nayler, O., and Stamm, S. Human tra2-beta1 autoregulates its protein concentration by influencing alternative splicing of its pre-mRNA. Hum Mol Genet 13, 509-524.
2004 Tupler R, Gabellini D. Molecular basis of facioscapulohumeral muscular dystrophy. Cell Mol Life Sci 61:557-566.
2004 Tycowski, K.T., Aab, A., and Steitz, J.A. Guide RNAs with 5? caps and novel box C/D snoRNA-like domains for modification of snRNAs in Metazoa. Curr. Biol. 14, 1985-1995.
2004 Verdone, L., Galardi, S., Page, D. and Beggs, J.D. Lsm proteins promote regeneration of pre-mRNA splicing activity. Current Biology 14: 1487-91.
2004 M.C.Wollerton, C. Gooding, E.J. Wagner, M.A. Garcia-Blanco and C.W.J. Smith. Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense mediated decay. Mol. Cell 13, 91-100
2003 Ajuh, P., and Lamond, A. I. Identification of peptide inhibitors of pre-mRNA splicing derived from the essential interaction domains of CDC5L and PLRG1. Nucleic Acids Res 31, 6104-6116.
2003 Brun, C., Suter, D., Pauli, C., Dunant, P., Lochmüller, H., Burgunder, J.M., Schümperli, D. and Weis, J. U7 snRNAs induce correction of mutated dystrophin pre-mRNA by exon skipping. Cell. Mol. Life Sci. 60, 557-566.
2003 Deidda G., Rossi N. and Tocchini-Valentini G.P. An archaeal endoribonuclease catalyses cis- and trans- non-spliceosomal splicing in murine cells. Nature Biotechnology 21, 1499-1504.
2003 de la Mata, M., Alonso, C. R., Kadener, S., Fededa, J. P., Blaustein, M., Pelisch, F., Cramer, P., Bentley, D. and Kornblihtt, A. R. A slow RNA polymerase II affects alternative splicing in vivo. Molecular Cell 12, 525-532. (News and Views in Nature Structural Biology 10, 876-878, 2003; selected as “exceptional”, factor 9, in Faculty of 1000).
2003 Gabellini D, Tupler R, Green MR. Transcriptional derepression as a cause of genetic diseases. Curr Opin Genet Dev 13:239-245.
2003 N. Gromak, A. Rideau, J. Southby, A.D.J. Scadden, C. Gooding, S. Hüttelmaier, R. H. Singer and C.W.J. Smith. The PTB interacting protein raver1 acts as a co-repressor in regulation of ?-tropomyosin alternative splicing. EMBO J. 22, 6356-6364
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